Skip to content

Error while creating Krona plots #246

@VictorBenedito

Description

@VictorBenedito

2023-06-21 12:07:40
Summarizing results...

Text versions of reports and plots for each metric (for all references and assemblies) are saved to /MP_Data/speedypipe/USER189_PROJECT189/results/M1/metaquast/summary/
Icarus (contig browser) is saved to /MP_Data/speedypipe/USER189_PROJECT189/results/M1/metaquast/icarus.html
Drawing interactive Krona plots...

'NoneType' object is not iterable
Traceback (most recent call last):
File "/home/ocardenas/.local/bin/metaquast.py", line 427, in
return_code = main(sys.argv[1:])
File "/home/ocardenas/.local/bin/metaquast.py", line 417, in main
html_saver.create_meta_report(output_dirpath, json_texts)
File "/home/ocardenas/.local/lib/python3.9/site-packages/quast_libs/html_saver/html_saver.py", line 257, in create_meta_report
create_krona_charts(taxons_for_krona, meta_log, results_dirpath, json_texts)
File "/home/ocardenas/.local/lib/python3.9/site-packages/quast_libs/html_saver/html_saver.py", line 363, in create_krona_charts
for section in report:
TypeError: 'NoneType' object is not iterable
ERROR! exception caught!

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions