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Summary of GSOC2019 calls #1

@avinashbarnwal

Description

@avinashbarnwal

21MAY2019
Relevant Information -

  1. What should be xgb dmatrix for Interval regression ?
    Ans :- Create two column for all the times
    2-column matrix representation of outputs=labels.
  2. un-censored output, event is obserrved, e.g. y_i = 5. (5, 5)

survival::Surv(10, 10, type="interval2")
[1] 10

  1. left-censored output, event not observed, but we know it happened some time before t_i=5. y_i = (-Inf = \underline y_i, 5=t_i=\overline y_i)

survival::Surv(-Inf, 10, type="interval2")
[1] 10-

  1. Right-censored output, event not observed , but we know it happened some time after t_i =5. y_i = (5,inf)

survival::Surv(5, Inf, type="interval2")
[1] 5+

  1. Interval-censored output, event not observed, but we know it happened some time in y_i = (5,10)

survival::Surv(5, 10, type="interval2")
[1] [5, 10]

There is no need for the survival object. This is more of a legacy.

  1. How to handle sigma in AFT?
    Ans:- Treat as a hyperparameter.

  2. What is the dimension of the predicted value of interval regression?
    Ans:- It is always one real value, not interval.

Relevant Document
https://github.com/tdhock/aft-poster/blob/master/HOCKING-AFT.pdf
http://members.cbio.mines-paristech.fr/~thocking/survival.pdf
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-9-269

Please Check.
@tdhock, @hcho3

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