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Description
21MAY2019
Relevant Information -
- What should be xgb dmatrix for Interval regression ?
Ans :- Create two column for all the times
2-column matrix representation of outputs=labels. - un-censored output, event is obserrved, e.g. y_i = 5. (5, 5)
survival::Surv(10, 10, type="interval2")
[1] 10
- left-censored output, event not observed, but we know it happened some time before t_i=5. y_i = (-Inf = \underline y_i, 5=t_i=\overline y_i)
survival::Surv(-Inf, 10, type="interval2")
[1] 10-
- Right-censored output, event not observed , but we know it happened some time after t_i =5. y_i = (5,inf)
survival::Surv(5, Inf, type="interval2")
[1] 5+
- Interval-censored output, event not observed, but we know it happened some time in y_i = (5,10)
survival::Surv(5, 10, type="interval2")
[1] [5, 10]
There is no need for the survival object. This is more of a legacy.
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How to handle sigma in AFT?
Ans:- Treat as a hyperparameter. -
What is the dimension of the predicted value of interval regression?
Ans:- It is always one real value, not interval.
Relevant Document
https://github.com/tdhock/aft-poster/blob/master/HOCKING-AFT.pdf
http://members.cbio.mines-paristech.fr/~thocking/survival.pdf
https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-9-269
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