Repositories list

• ss3-source-code

  Public
  The source code for Stock Synthesis (SS3).

  fisheriesstockassessmentstock-synthesis+ 1noaa-nsap

  C++

  •

  Creative Commons Zero v1.0 Universal

  •20•43•104•1•Updated Sep 5, 2025Sep 5, 2025

• AA-SI_aalibrary

  Public
  A python library used for fetching acoustics data.

  Python

  •

  Apache License 2.0

  •2•4•0•0•Updated Sep 5, 2025Sep 5, 2025

• asar

  Public
  Partially automate a U.S. stock assessment report.

  latexr-packagestock-assessment+ 3quartostock-assessment-reportsnoaa-nsap

  R

  •

  MIT License

  •9•32•16•2•Updated Sep 5, 2025Sep 5, 2025

• DisMAP

  Public
  The Distribution Mapping and Analysis Portal is a national web application which displays spatial distribution data for over 400 marine fish and macroinvertebrates

  noaa-nsap

  Python

  •4•6•2•0•Updated Sep 4, 2025Sep 4, 2025

• surveyresamplr

  Public
  R

  •

  GNU General Public License v3.0

  •1•0•9•0•Updated Sep 4, 2025Sep 4, 2025

• stockplotr

  Public
  R package that contains general tables and figures such as standard objects in an assessment report, and other important visualizations to interpret results of stock assessment models.

  R

  •

  Other

  •6•8•20•4•Updated Sep 4, 2025Sep 4, 2025

• ghactions4r

  Public
  Reusable github actions workflows for R packages

  rnoaagithub-actions+ 1noaa-fisheries

  R

  •1•13•12•1•Updated Sep 3, 2025Sep 3, 2025

• SSMSE

  Public
  Management Strategy Evaluation (MSE) using Stock Synthesis (SS3)

  stock-synthesis

  R

  •

  MIT License

  •10•20•26•0•Updated Sep 3, 2025Sep 3, 2025

• on-off-boarding

  Public
  Workflows for onboarding and offboarding collaborators to projects within NOAA Fisheries Office of Science and Technology

  noaa-nsap

  0•1•7•2•Updated Sep 2, 2025Sep 2, 2025

• journals

  Public
  Bibliography files for journals of interest to fisheries

  noaa-nsap

  TeX

  •

  GNU General Public License v3.0

  •0•15•6•1•Updated Sep 1, 2025Sep 1, 2025

• FIT-status

  Public
  nmfs-fish-tools status dashboard based on https://github.com/espinielli/status

  dashboardproject-managementnoaa-fit

  R

  •0•2•1•0•Updated Sep 1, 2025Sep 1, 2025

• noaa-fit-resources

  Public
  Source code for the FIT software development resources

  CSS

  •

  The Unlicense

  •6•1•4•0•Updated Aug 26, 2025Aug 26, 2025

• ss3-website

  Public
  SS3 Website

  stock-synthesisnoaa-nsap

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •0•0•5•0•Updated Aug 26, 2025Aug 26, 2025

• ss3-source-code-gha-test

  Public
  The source code for Stock Synthesis (SS3).

  C++

  •

  Creative Commons Zero v1.0 Universal

  •20•0•0•1•Updated Aug 25, 2025Aug 25, 2025

• workflows-workshop

  Public
  Home to the agenda, materials, and communication for the stock assessment workflows workshops being held starting in 2026.

  0•2•29•0•Updated Aug 21, 2025Aug 21, 2025

• noaa-fit

  Public
  Repo for storing the hosted site of the NOAA Fisheries Integrated Toolbox

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Aug 20, 2025Aug 20, 2025

• FIT_web_templating

  Public
  Templates and JSON model data for the toolbox web pages

  HTML

  •0•1•24•0•Updated Aug 20, 2025Aug 20, 2025

• ss3-doc

  Public
  Source code for the Stock Synthesis manual and other documentation

  latexstock-synthesisnoaa-nsap

  TeX

  •

  Creative Commons Zero v1.0 Universal

  •3•3•12•0•Updated Aug 20, 2025Aug 20, 2025

• PAM-Soundscapes

  Public
  Summary of NOAA Fisheries PAM-SI Soundscapes Research

  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Aug 18, 2025Aug 18, 2025

• ss3-user-examples

  Public
  Stock synthesis example models for users

  fisheriesstock-synthesisnoaa-nsap

  Scheme

  •

  Creative Commons Zero v1.0 Universal

  •5•2•8•0•Updated Aug 18, 2025Aug 18, 2025

• ss3-test-models

  Public
  Stock Synthesis models used for testing

  fisheriesstock-synthesisnoaa-nsap

  Scheme

  •

  Creative Commons Zero v1.0 Universal

  •1•3•13•1•Updated Aug 18, 2025Aug 18, 2025

• AA-SI_DataRoadMap

  Public
  Road map for active acoustic data

  MIT License

  •0•1•0•0•Updated Aug 14, 2025Aug 14, 2025

• PAM_National_Network

  Public
  National coordination page for the seven NOAA Fisheries Passive Acoustic Monitoring Programs

  JavaScript

  •

  Creative Commons Zero v1.0 Universal

  •0•3•11•0•Updated Aug 13, 2025Aug 13, 2025

• ss3diags

  Public
  R package with advanced diagnostics to evaluate a Stock Synthesis model. Diagnostics include residual analyses, hindcasting and cross-validation techniques, and retrospective analyses.

  r-packagestock-synthesis

  R

  •6•5•6•0•Updated Aug 9, 2025Aug 9, 2025

• nmfspalette

  Public
  🎨 R color palettes for NOAA Fisheries official colors

  rcolor-palettenoaa+ 1noaa-nsap

  R

  •

  Other

  •10•36•2•0•Updated Aug 7, 2025Aug 7, 2025

• AA-SI_GCPSetup

  Public
  A startup script for onboarding new users by setting up environments and installing AA-SI tools and dependencies.

  linuxauthenticationpackages+ 4permissionsacousticssetup-scriptautomation-scripts

  Shell

  •0•2•0•0•Updated Aug 6, 2025Aug 6, 2025

• ageproR

  Public
  Developing R package for AGEPRO (Age Structure Projection Model) with Prototype JSON data format.

  R

  •

  GNU General Public License v3.0

  •0•1•9•0•Updated Jul 31, 2025Jul 31, 2025

• AA-SI_KMeans

  Public
  Performs inter-frequency K-Means clustering on acoustic data using echopype

  machine-learningtaxonomykmeans-clustering+ 2expirimentalechosounders

  Python

  •

  MIT License

  •0•0•2•0•Updated Jul 23, 2025Jul 23, 2025

• PAM-minke-whale-detector_batch-processing_linux

  Public
  Minke detector running in batch mode (with processing queue) in a linux environment. Developer: Xavier Mouy

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• AA-SI_api

  Public
  Python

  •0•0•3•0•Updated Jul 18, 2025Jul 18, 2025