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Description
Bug Report
Is the issue related to model conversion?
No
Describe the bug
Building from source with pip install -e .
resulted in an error with the latest setuptool.
Running
SETUPTOOLS_ENABLE_FEATURES="legacy-editable" pip install -e .
works.
System information
- OS Platform and Distribution (e.g. Linux Ubuntu 16.04): Linux Ubuntu
- ONNX version (e.g. 1.7): master
- Python version: 3.10.7
- GCC/Compiler version (if compiling from source):
- CMake version:
- Protobuf version:
- Visual Studio version (if applicable):
Package Version Editable project location
---------------------------- --------- -------------------------
absl-py 1.2.0
astunparse 1.6.3
cachetools 5.2.0
certifi 2022.9.14
charset-normalizer 2.1.1
contourpy 1.0.5
cycler 0.11.0
etils 0.8.0
flatbuffers 2.0.7
fonttools 4.37.3
gast 0.4.0
google-auth 2.11.1
google-auth-oauthlib 0.4.6
google-pasta 0.2.0
grpcio 1.48.1
h5py 3.7.0
idna 3.4
importlib-resources 5.9.0
jax 0.3.17
jaxlib 0.3.15
joblib 1.2.0
keras 2.10.0
Keras-Preprocessing 1.1.2
kiwisolver 1.4.4
libclang 14.0.6
Markdown 3.4.1
MarkupSafe 2.1.1
matplotlib 3.6.0
numpy 1.23.3
oauthlib 3.2.1
onnx 1.12.0 /workspaces/onnx
opt-einsum 3.3.0
packaging 21.3
pandas 1.5.0
Pillow 9.2.0
pip 22.2.2
plotly 5.10.0
protobuf 3.19.5
pyasn1 0.4.8
pyasn1-modules 0.2.8
pyparsing 3.0.9
python-dateutil 2.8.2
pytz 2022.2.1
requests 2.28.1
requests-oauthlib 1.3.1
rsa 4.9
scikit-learn 1.1.2
scipy 1.9.1
seaborn 0.12.0
setuptools 65.3.0
six 1.16.0
tenacity 8.0.1
tensorboard 2.10.0
tensorboard-data-server 0.6.1
tensorboard-plugin-wit 1.8.1
tensorflow 2.10.0
tensorflow-estimator 2.10.0
tensorflow-io-gcs-filesystem 0.27.0
termcolor 2.0.1
threadpoolctl 3.1.0
torch 1.12.1
typing_extensions 4.3.0
urllib3 1.26.12
Werkzeug 2.2.2
wheel 0.37.1
wrapt 1.14.1
zipp 3.8.1
Reproduction instructions
pip install -e .
Expected behavior
Notes
Building wheels for collected packages: onnx
Building editable for onnx (pyproject.toml) ... error
error: subprocess-exited-with-error
× Building editable for onnx (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [114 lines of output]
running editable_wheel
creating /tmp/pip-wheel-2mha55tp/tmpkm5xxdfk/onnx.egg-info
writing /tmp/pip-wheel-2mha55tp/tmpkm5xxdfk/onnx.egg-info/PKG-INFO
writing dependency_links to /tmp/pip-wheel-2mha55tp/tmpkm5xxdfk/onnx.egg-info/dependency_links.txt
writing entry points to /tmp/pip-wheel-2mha55tp/tmpkm5xxdfk/onnx.egg-info/entry_points.txt
writing requirements to /tmp/pip-wheel-2mha55tp/tmpkm5xxdfk/onnx.egg-info/requires.txt
writing top-level names to /tmp/pip-wheel-2mha55tp/tmpkm5xxdfk/onnx.egg-info/top_level.txt
writing manifest file '/tmp/pip-wheel-2mha55tp/tmpkm5xxdfk/onnx.egg-info/SOURCES.txt'
reading manifest file '/tmp/pip-wheel-2mha55tp/tmpkm5xxdfk/onnx.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.c' under directory 'onnx'
adding license file 'LICENSE'
writing manifest file '/tmp/pip-wheel-2mha55tp/tmpkm5xxdfk/onnx.egg-info/SOURCES.txt'
creating '/tmp/pip-wheel-2mha55tp/tmpkm5xxdfk/onnx-1.12.0.dist-info'
adding license file "LICENSE" (matched pattern "LICENSE")
creating /tmp/pip-wheel-2mha55tp/tmpkm5xxdfk/onnx-1.12.0.dist-info/WHEEL
/tmp/pip-build-env-5rbu00q6/overlay/lib/python3.10/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build_py
running create_version
running cmake_build
Extra cmake args: ['-DONNX_USE_PROTOBUF_SHARED_LIBS=ON']
Using cmake args: ['/usr/bin/cmake', '-DPYTHON_INCLUDE_DIR=/usr/local/python/3.10.7/include/python3.10', '-DPYTHON_EXECUTABLE=/usr/local/python/3.10.7/bin/python3.10', '-DBUILD_ONNX_PYTHON=ON', '-DCMAKE_EXPORT_COMPILE_COMMANDS=ON', '-DONNX_NAMESPACE=onnx', '-DPY_EXT_SUFFIX=.cpython-310-x86_64-linux-gnu.so', '-DCMAKE_BUILD_TYPE=Release', '-DONNX_ML=1', '-DONNX_USE_PROTOBUF_SHARED_LIBS=ON', '/workspaces/onnx']
Generated: /workspaces/onnx/.setuptools-cmake-build/onnx/onnx-ml.proto
Generated: /workspaces/onnx/.setuptools-cmake-build/onnx/onnx-operators-ml.proto
Generated: /workspaces/onnx/.setuptools-cmake-build/onnx/onnx-data.proto
-- Could NOT find pybind11 (missing: pybind11_DIR)
-- pybind11 v2.9.1
--
-- ******** Summary ********
-- CMake version : 3.16.3
-- CMake command : /usr/bin/cmake
-- System : Linux
-- C++ compiler : /usr/bin/c++
-- C++ compiler version : 9.4.0
-- CXX flags : -Wnon-virtual-dtor
-- Build type : Release
-- Compile definitions : __STDC_FORMAT_MACROS
-- CMAKE_PREFIX_PATH :
-- CMAKE_INSTALL_PREFIX : /usr/local
-- CMAKE_MODULE_PATH :
--
-- ONNX version : 1.12.0
-- ONNX NAMESPACE : onnx
-- ONNX_USE_LITE_PROTO : OFF
-- USE_PROTOBUF_SHARED_LIBS : ON
-- Protobuf_USE_STATIC_LIBS : OFF
-- ONNX_DISABLE_EXCEPTIONS : OFF
-- ONNX_WERROR : OFF
-- ONNX_BUILD_TESTS : OFF
-- ONNX_BUILD_BENCHMARKS : OFF
--
-- Protobuf compiler : /usr/bin/protoc
-- Protobuf includes : /usr/include
-- Protobuf libraries : /usr/lib/x86_64-linux-gnu/libprotobuf.so;-lpthread
-- BUILD_ONNX_PYTHON : ON
-- Python version :
-- Python executable : /usr/local/python/3.10.7/bin/python3.10
-- Python includes : /usr/local/python/3.10.7/include/python3.10
-- Configuring done
-- Generating done
-- Build files have been written to: /workspaces/onnx/.setuptools-cmake-build
[ 3%] Built target gen_onnx_proto
[ 6%] Built target gen_onnx_data_proto
[ 9%] Built target gen_onnx_operators_proto
[ 24%] Built target onnx_proto
[ 96%] Built target onnx
[100%] Built target onnx_cpp2py_export
running build_ext
copying /workspaces/onnx/.setuptools-cmake-build/onnx_cpp2py_export.cpython-310-x86_64-linux-gnu.so -> /tmp/tmpksx5ht08.build-lib/onnx
Traceback (most recent call last):
File "/tmp/pip-build-env-5rbu00q6/overlay/lib/python3.10/site-packages/setuptools/_distutils/file_util.py", line 40, in _copy_file_contents
fdst = open(dst, 'wb')
FileNotFoundError: [Errno 2] No such file or directory: '/tmp/tmpksx5ht08.build-lib/onnx/onnx_cpp2py_export.cpython-310-x86_64-linux-gnu.so'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/tmp/pip-build-env-5rbu00q6/overlay/lib/python3.10/site-packages/setuptools/command/editable_wheel.py", line 140, in run
self._create_wheel_file(bdist_wheel)
File "/tmp/pip-build-env-5rbu00q6/overlay/lib/python3.10/site-packages/setuptools/command/editable_wheel.py", line 330, in _create_wheel_file
files, mapping = self._run_build_commands(dist_name, unpacked, lib, tmp)
File "/tmp/pip-build-env-5rbu00q6/overlay/lib/python3.10/site-packages/setuptools/command/editable_wheel.py", line 261, in _run_build_commands
self._run_build_subcommands()
File "/tmp/pip-build-env-5rbu00q6/overlay/lib/python3.10/site-packages/setuptools/command/editable_wheel.py", line 288, in _run_build_subcommands
self.run_command(name)
File "/tmp/pip-build-env-5rbu00q6/overlay/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 319, in run_command
self.distribution.run_command(command)
File "/tmp/pip-build-env-5rbu00q6/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 1217, in run_command
super().run_command(command)
File "/tmp/pip-build-env-5rbu00q6/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 992, in run_command
cmd_obj.run()
File "<string>", line 255, in run
File "/tmp/pip-build-env-5rbu00q6/overlay/lib/python3.10/site-packages/setuptools/command/build_ext.py", line 84, in run
_build_ext.run(self)
File "/tmp/pip-build-env-5rbu00q6/overlay/lib/python3.10/site-packages/setuptools/_distutils/command/build_ext.py", line 346, in run
self.build_extensions()
File "<string>", line 272, in build_extensions
File "/tmp/pip-build-env-5rbu00q6/overlay/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 351, in copy_file
return file_util.copy_file(
File "/tmp/pip-build-env-5rbu00q6/overlay/lib/python3.10/site-packages/setuptools/_distutils/file_util.py", line 163, in copy_file
_copy_file_contents(src, dst)
File "/tmp/pip-build-env-5rbu00q6/overlay/lib/python3.10/site-packages/setuptools/_distutils/file_util.py", line 42, in _copy_file_contents
raise DistutilsFileError(
distutils.errors.DistutilsFileError: could not create '/tmp/tmpksx5ht08.build-lib/onnx/onnx_cpp2py_export.cpython-310-x86_64-linux-gnu.so': No such file or directory
error: Support for editable installs via PEP 660 was recently introduced
in `setuptools`. If you are seeing this error, please report to:
https://github.com/pypa/setuptools/issues
Meanwhile you can try the legacy behavior by setting an
environment variable and trying to install again:
SETUPTOOLS_ENABLE_FEATURES="legacy-editable"
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building editable for onnx
Failed to build onnx
ERROR: Could not build wheels for onnx, which is required to install pyproject.toml-based projects