add module for btyper3 #3817
add module for btyper3 #3817
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| channels: | ||
| - conda-forge | ||
| - bioconda | ||
| - defaults |
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| - defaults |
| """ | ||
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| stub: | ||
| def args = task.ext.args ?: '' |
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| def args = task.ext.args ?: '' |
| type: map | ||
| description: | | ||
| Groovy Map containing sample information | ||
| e.g. `[ id:'test', single_end:false ]` |
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| e.g. `[ id:'test', single_end:false ]` | |
| e.g. `[ id:'test' ]` |
Probably does not apply here?
| type: map | ||
| description: | | ||
| Groovy Map containing sample information | ||
| e.g. `[ id:'test', single_end:false ]` |
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| e.g. `[ id:'test', single_end:false ]` | |
| e.g. `[ id:'test' ]` |
| { assert snapshot( | ||
| process.out.tsv, | ||
| process.out.versions | ||
| ).match() | ||
| } |
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Can you also assert whether the results folder is present? maybe even check the subfiles that are created in that folder.
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I think this file is not needed anymore
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run nf-core modules lint --fix to bring this into the new format :)
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Hey @rpetit3, are you planning to work on this? We are doing some nf-core cleaning and are trying to close PRs that nobody works on anymore - just to know if you plan to keep working on this one :) |
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Closing due to inactivity. Feel free to reopen the PR if you (or anyone else) have some time to finish this. |
PR checklist
Closes #3816
versions.ymlfile.labelPROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-awarePROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-awarePROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware