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add module for stecfinder #2702

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Merged
merged 4 commits into from
Oct 5, 2023
Merged

add module for stecfinder #2702

merged 4 commits into from
Oct 5, 2023

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rpetit3
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@rpetit3 rpetit3 commented Dec 28, 2022 •
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PR checklist

Closes #2701

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
    • PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

@rpetit3 rpetit3 added new module Adding a new module Ready for Review labels Dec 28, 2022
nvnieuwk
nvnieuwk approved these changes Jan 2, 2023
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@nvnieuwk nvnieuwk left a comment

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LGTM!

SPPearce
SPPearce reviewed Oct 3, 2023
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@SPPearce SPPearce added this pull request to the merge queue Oct 5, 2023
Merged via the queue into nf-core:master with commit ff8e2cc Oct 5, 2023
lrauschning pushed a commit to lrauschning/modules that referenced this pull request Oct 16, 2023
@rpetit3 @SPPearce
add module for stecfinder (nf-core#2702)
1abd72c 
* add module for stecfinder

* make prettier

* Update modules/nf-core/stecfinder/main.nf

---------

Co-authored-by: Simon Pearce <24893913+SPPearce@users.noreply.github.com>
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@SPPearce SPPearce SPPearce approved these changes

@nvnieuwk nvnieuwk nvnieuwk approved these changes

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new module: stecfinder
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@rpetit3 @SPPearce @nvnieuwk