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anna-parker

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Commits on Jan 27, 2023

• try to fix the web app

  anna-parker

  committed
  4a9ae56

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• add example to generate test seqeunces

  anna-parker

  committed
  3051d89

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• correct aa mutations in test, export tree builder results in web, add aa mutations and deletions (needs to be reviewed) to tree, format code

  anna-parker

  committed
  2597e50

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Commits on Jan 25, 2023

• fix ladderize function, sort results

  anna-parker

  committed
  af2bfc9

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• fix sorting error, do not look at deletions

  anna-parker

  committed
  b1a95cc

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Commits on Jan 24, 2023

• update Cargo lock, fix formatting

  anna-parker

  committed
  c5a1218

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• fix error is nearest node is root node

  anna-parker

  committed
  25fe735

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• ladderize graph

  anna-parker

  committed
  b393232

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• allow backward traversal to parent, set up reversion mutation calculation function, fix leaves in graph

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  committed
  b495a40

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Commits on Jan 23, 2023

• format code, correct private nuc mutations for recursion

  anna-parker

  committed
  8a37235

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Commits on Jan 22, 2023

• fix edge index error when deleating nodes

  anna-parker

  committed
  cf49b22

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• iterate over tree and modify private nuc mutations of children

  anna-parker

  committed
  bd66de7

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Commits on Jan 19, 2023

• fix when graph is calculated, remove edge from node.outbound_edges in remove function and fix edge order in insert_node_before function

  anna-parker

  committed
  460cd25

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• look at neighborhood of nearest node to find optimal attachment point

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  committed
  ab1c736

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Commits on Jan 18, 2023

• check tree produced using auspicegraph = current tree

  anna-parker

  committed
  995ca7d

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• perform same steps but with graph

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  committed
  356a314

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Commits on Jan 17, 2023

• define order of attaching sequences, ladderize output tree

  anna-parker

  committed
  7409bbd

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• fix error in getopt

  anna-parker

  committed
  28184c1

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• correct issues with branch length

  anna-parker

  committed
  ea363f6

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• fix move function

  anna-parker

  committed
  f1247f4

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Commits on Jan 13, 2023

• add tests

  anna-parker

  committed
  8fb91b9

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• fix indexing issue

  anna-parker

  committed
  c29c9e1

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• treebuilder prototype

  anna-parker

  committed
  67e3b9a

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• Initial commit

  anna-parker

  authored
  7c6381e

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Commits on Nov 11, 2022

• correct run command

  anna-parker

  committed
  a057f0c

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