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fqtkWrapper Public
Forked from BrftM/fqtkWrapperR package wrapper around the command-line tool `fqtk`, developed by Fulcrum Genomics.
R Other UpdatedJul 31, 2025 -
guideCounterWrapper Public
Forked from BrftM/guideCounterWrapperR package wrapper around the command-line tool `guide-counter`, developed by Fulcrum Genomics.
R Other UpdatedJul 31, 2025 -
PKGBUILDs Public
Build scripts for the Archlinux User Repository
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snakemake Public
Forked from snakemake/snakemakeThis is the development home of the workflow management system Snakemake. For general information, see
HTML MIT License UpdatedJul 26, 2025 -
clustermq Public
R package to send function calls as jobs on LSF, SGE, Slurm, PBS/Torque, or each via SSH
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overlay Public
Gentoo overlay for (mainly scientific) software that's not quite ready for the main tree
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deepTools Public
Forked from deeptools/deepToolsTools to process and analyze deep sequencing data.
Python Other UpdatedJan 26, 2025 -
narray Public
R package for subset- and name-aware array utility functions
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mad2-transposon Public
Analysis code for "Cancer tolerance to chromosomal instability is driven by Stat1 inactivation in vivo"
R UpdatedFeb 4, 2024 -
HoneyBADGER Public
Forked from JEFworks-Lab/HoneyBADGERHMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data
R GNU General Public License v3.0 UpdatedJan 24, 2024 -
VariantAnnotation Public
Forked from Bioconductor/VariantAnnotationAnnotation of Genetic Variants
R UpdatedNov 6, 2023 -
ProjecTILs Public
Forked from carmonalab/ProjecTILsInterpretation of T cell states using reference single-cell atlases
R GNU General Public License v3.0 UpdatedSep 19, 2023 -
gentoo_prefix_ci Public
Forked from awesomebytes/gentoo_prefix_ciA Gentoo Prefix continuous integration repo. Find precompiled Gentoo Prefix in the releases section
Shell BSD 2-Clause "Simplified" License UpdatedJul 27, 2023 -
cppzmq Public
Forked from zeromq/cppzmqHeader-only C++ binding for libzmq
C++ MIT License UpdatedMay 29, 2023 -
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TCGAbiolinks-downloader Public
GNU Make-driven workflow to download TCGA data via the TCGAbiolinks package
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GRN-aneup-purity Public
Analysis code for "Gene networks in cancer are biased by aneuploidies and sample impurities"
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Aneufinder2 Public
Forked from ataudt/aneufinderFind CNVs in single cell sequencing data.
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GENIE3 Public
Forked from aertslab/GENIE3GENIE3 (GEne Network Inference with Ensemble of trees) R-package
C UpdatedMay 3, 2019
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