Search results

guess_TopologyAttrs guesses incorrect bonds for DMS lipids in MDAnalysis > 2.7.0

Status: Open.

#5102 In mdanalysis/mdanalysis;

· ricard1997 opened on Aug 27, 2025

Inncorrect use of simple method when random frames are selected in run()

Component-Analysis

defect

Status: Open.

#5100 In mdanalysis/mdanalysis;

· gitsirsha opened on Aug 18, 2025

guessing improper

Status: Open.

#5099 In mdanalysis/mdanalysis;

· askforarun opened on Aug 14, 2025

Cite: Add citation to <code>IMDReader</code> once IMDv3 paper is published

Status: Open.

#5094 In mdanalysis/mdanalysis;

· amruthesht opened on Aug 4, 2025

Parse hexadecimal resid from OpenMM in PDBParser

decision neededrequires input from developers before moving furtherrequires input from developers before moving further

Format-PDB

Status: Open.

Feature

#5089 In mdanalysis/mdanalysis;

· rladbtls1998 opened on Jul 24, 2025

MAINT, BENCH: remove reference to nose

benchmarksperformance benchmarking with ASVperformance benchmarking with ASV

maintainability

Status: Open.

#5085 In mdanalysis/mdanalysis;

· tylerjereddy opened on Jul 18, 2025

Build time tests makes machine to hang

downstream

testing

Status: Open.

#5078 In mdanalysis/mdanalysis;

· sanvila opened on Jul 8, 2025

the <code>InterRDF_s</code> class is significantly slower than running multiple <code>InterRDF</code> instances sequentially

Component-Analysis

performance

Status: Open.

#5067 In mdanalysis/mdanalysis;

· gitzhangch opened on Jun 21, 2025

Chain ID not detected in DCD and PDB files created with VMD

Format-PDB

more information neededPlease reply to requests for information or the issue will be closed.Please reply to requests for information or the issue will be closed.

Status: Open.

#5058 In mdanalysis/mdanalysis;

· biomolsim opened on Jun 2, 2025

MDAnalysis fails with Cython 3.1.0

installation

maintainability

Priority-High

testing

Status: Open.

Bug

#5057 In mdanalysis/mdanalysis;

· IAlibay opened on May 31, 2025

Bug in conversion units of speed

Component-Core

defect

Status: Open.

Bug

#5051 In mdanalysis/mdanalysis;

· raulloiscuns opened on May 27, 2025

confusing error message from DSSP for too short peptide stretches

Component-Analysis

Component-Docs

help wanted

Status: Open.

#5046 In mdanalysis/mdanalysis;

· mrobinson-hub opened on May 14, 2025