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--rename: NameError: name 'comment' is not defined

Status: Open.

#857 In marcelm/cutadapt;

· osthomas opened on Sep 8, 2025

error with --rest-file or -r flags: AttributeError: 'LinkedMatch' object has no attribute 'rest'

Status: Open.

#856 In marcelm/cutadapt;

· clmattson opened on Aug 14, 2025

Sequences exceeding mismatch threshold not discarded as expected in Cutadapt 4.9

Status: Open.

#855 In marcelm/cutadapt;

· camilababo opened on Jul 25, 2025

Adapter Cutting and Demultiplexing

Status: Open.

#854 In marcelm/cutadapt;

· gfill88 opened on Jul 8, 2025

Mixing file-based adapter and literal adapter in linked adapter

Status: Open.

#851 In marcelm/cutadapt;

· whatever60 opened on Jun 25, 2025

Demultiplexing from only read2 barcodes pushes all outputs to untrimmed

Status: Open.

#849 In marcelm/cutadapt;

· elliot-imler opened on Jun 17, 2025

How many barcodes can cutadapt handle at once?

Status: Open.

#848 In marcelm/cutadapt;

· zuoyichen opened on Jun 10, 2025

Demultiplexing and adapter/barcode trimming from PacBio amplicon reads

Status: Open.

#847 In marcelm/cutadapt;

· EndemicT opened on Jun 9, 2025

suggestions on primer+spacers using cutadapt

Status: Open.

#846 In marcelm/cutadapt;

· saharbagheri opened on Jun 5, 2025

Anchoring barcode file for demultiplexing throws an error

Status: Open.

#845 In marcelm/cutadapt;

· lchen3 opened on Jun 3, 2025

Exit after emitting X trimmed reads

Status: Open.

#844 In marcelm/cutadapt;

· sjaenick opened on May 30, 2025

how to clip a variable *end* 5' adapter?

Status: Open.

#841 In marcelm/cutadapt;

· yfarjoun opened on May 20, 2025