AssertionError [result_end_clip >= 0] in resolve_triplets_kmerify.py #99
Description
I ran into this error in the processONT stage:
Traceback (most recent call last):
File "/usr/local/lib/verkko/scripts/resolve_triplets_kmerify.py", line 915, in <module>
resolve(node_lens, edge_overlaps, node_seqs, edges, paths_crossing, coverage, min_allowed_coverage, removable_nodes)
File "/usr/local/lib/verkko/scripts/resolve_triplets_kmerify.py", line 629, in resolve
(new_nodes, resolved) = resolve_nodes(current_length, current_nodes, paths_crossing, node_seqs, node_lens, edges, maybe_resolvable, min_edge_support, min_coverage, removable_nodes)
File "/usr/local/lib/verkko/scripts/resolve_triplets_kmerify.py", line 342, in resolve_nodes
assert result_end_clip >= 0
AssertionError
Could you please provide any hint regarding how to circumvent this? the input files are too large to share, but please let me know should I inspect the logs further and/or provide other intermediate files.
Thanks!