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Hi,
I have a single case of a segfault in the consensus phase:
21699 Failed with 'Aborted'; backtrace (libbacktrace):
21700 - ALIGNED 0.0238 at 133292-142920
21701 ERROR: alignment from 133293 to 142920, but tiglen is only 132087
21702 utgcns: utgcns/unitigConsensus.C:867: bool alignEdLib(dagAlignment&, tgPosition&, char*, uint32, char*, uint32, double, bool): Assertion `aln.end <= tiglen' failed.
21703
21704 Failed with 'Aborted'; backtrace (libbacktrace):
21705
21706 Failed with 'Segmentation fault'; backtrace (libbacktrace):
21707 ./packages/part026.sh: line 19: 135788 Segmentation fault /[...]/verkko/wd/.snakemake/conda/c410c39ac1cf6bea6ae75
21707 0999a5ce20f_/lib/verkko/bin/utgcns -V -V -V -threads 8 -import ../7-consensus/packages/part026.cnspack -A ../7-consensus/packages/part026.fasta.WORKING -C 2 -norealign -max
21707 coverage 50 -e 0.05 -em 0.20 -EM 0 -l 3000 -edlib
21708
21709 Consensus did not finish successfully, exit code 0.
It's v1.4 plus two bug fixes (3119b39 and 4f6a54e). As a side note, the overall run was registered by Snakemake as having failed, despite the weird did not finish successfully, exit code 0.
Best,
Peter
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