v1.4: assertionerror in ont resolve graph #164
Description
Hi,
I have two v1.4 runs with the following assertion failing:
>>> file: ont_resolved_graph.gfa.err
>>> ont resolve error
resolve k=8423, extended 1 nodes into 2 nodes
resolve hairpin >utig1-11098
Traceback (most recent call last):
File "[...]/lib/verkko/scripts/resolve_triplets_kmerify.py", line 1031, in <module>
resolve(node_lens, edge_overlaps, node_seqs, edges, paths_crossing, coverage, min_allowed_coverage, removable_nodes)
File "[...]/lib/verkko/scripts/resolve_triplets_kmerify.py", line 744, in resolve
assert len(resolved) == 0
AssertionError
I can share the Verkko run directory for debugging purposes, but only via Globus (push or pull).
Best,
Peter