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AssertionError in 2-processGraph step (by lib/verkko/scripts/fix_haplogaps.py) #147

@chunlinxiao

Description

@chunlinxiao

Hi,

I was trying to test verkko (v1.3.1) using hifi + ONT data, but encountered error as below:

"
......
mend <27362 >95052
mend >8441 >87541
mend <32264 >89329
Traceback (most recent call last):
File "...miniconda3/lib/verkko/scripts/fix_haplogaps.py", line 203, in
assert edge[0] not in node_cuts
AssertionError
"
do you have any suggestion?

thanks in advance.

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