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Description
Hello. Thanks so much for providing this resource to the community!
I instal verkko using conda.
I was trying to co-assemble hifi and ont data using verkko and encounter the following error :
"
Error in rule buildGraph:
jobid: 4
input: hifi-corrected.fasta.gz
output: 1-buildGraph/hifi-resolved.gfa, 1-buildGraph/hifi_nodecov.csv, 1-buildGraph/paths.gaf
log: 1-buildGraph/buildGraph.err (check log file(s) for error details)
shell:
"
And when I look at the log file I have this :
MBG: src/HPCConsensus.cpp:145: std::vector<std::tuple<long unsigned int, long unsigned int, long unsigned int, long unsigned int, bool, long unsigned int, long unsigned int> > getMatchBlocks(const std::vector<std::vector >&, const UnitigGraph&, const ReadPath&, std::vector, size_t, size_t): Assertion `readEnd - readStart == unitigEnd - unitigStart' failed.
Aborted
I saw in the issue #67 that it could be the version of MBG (1.0.10) but mine is more recent (1.0.14).
buildGraph.err.txt
verkko_assembly.e.txt
verkko_assembly.out.txt