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Error in loadNamespace(x) : there is no package called ‘scrapper’

Status: Open.

#298 In SingleR-inc/SingleR;

· David-666-Y opened on Jul 21, 2025

Annotate Bulk RNASeq based on a single cell RNASeq reference

Status: Open.

#297 In SingleR-inc/SingleR;

· xiw588 opened on May 6, 2025

only some clusters are annotated

Status: Open.

#296 In SingleR-inc/SingleR;

· feanaros opened on Mar 21, 2025

annotation_colors option in plotMarkerHeatmap?

Status: Open.

#295 In SingleR-inc/SingleR;

· jeremymchacon opened on Mar 18, 2025

How the score for each cell type calculated in singleR using de.method = "wilcox"

Status: Open.

#294 In SingleR-inc/SingleR;

· raragreen opened on Mar 1, 2025

cannot use de.method="wilcox" and plotMarkerHeatmap function.

Status: Open.

#291 In SingleR-inc/SingleR;

· AmmyDK opened on Dec 31, 2024

Error in is.null(rownames(x)) && nrow(x) : invalid 'y' type in 'x && y' only on ImmGen data.

Status: Open.

#269 In SingleR-inc/SingleR;

· aleferna opened on May 13, 2024

Error: useNames = NA is defunct. Instead, specify either useNames = TRUE or useNames = FALSE. Traceback:

Status: Open.

#268 In SingleR-inc/SingleR;

· ArzooShamoon opened on May 13, 2024

Installation of SingleR in R/4.2.2 using BiocManager v3.16 fails

Status: Open.

#260 In SingleR-inc/SingleR;

· star0044 opened on Jan 8, 2024

SingleR: did not converge in 10 iterations

Status: Open.

#248 In SingleR-inc/SingleR;

· abulislam opened on Oct 25, 2023

Example of using harmonised labels for <code>de.method="wilcox"</code> instead of classic marker detection

Status: Open.

#247 In SingleR-inc/SingleR;

· denvercal1234GitHub opened on Sep 7, 2023

Is it appropriate to use RNAseq data to annotate flow cytometry data via SingleR?

Status: Open.

#246 In SingleR-inc/SingleR;

· denvercal1234GitHub opened on Sep 6, 2023