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SMD Bioinformatics Lund

Bioinformatic team at Section for Molecular Diagnostics, Laboratory Services, Region Skåne, Lund

13 followers
Sweden

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gens gens Public

TypeScript 16 6
nextflow_wgs nextflow_wgs Public

Perl 7 6
nextflow_microwgs nextflow_microwgs Public

Perl 2 1
nextflow_tumwgs nextflow_tumwgs Public

Perl 2 2
SomaticPanelPipeline SomaticPanelPipeline Public

Nextflow 2

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All CSS HTML JavaScript Nextflow Perl Python Roff Shell Standard ML TypeScript

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Showing 10 of 60 repositories

bonsai Public
Visualize and analyze resistance and outbreak of bacterial pathogen

SMD-Bioinformatics-Lund/bonsai’s past year of commit activity

Standard ML 6 GPL-3.0 3 37 2 Updated Sep 11, 2025
nextflow_tumwgs Public

SMD-Bioinformatics-Lund/nextflow_tumwgs’s past year of commit activity

Perl 2 2 18 (2 issues need help) 0 Updated Sep 11, 2025
bonsai-prp Public
Pipeline output Processing Program for Bonsai

SMD-Bioinformatics-Lund/bonsai-prp’s past year of commit activity

Python 0 GPL-3.0 2 4 1 Updated Sep 10, 2025
coyote_cli Public
command line interface for coyote

SMD-Bioinformatics-Lund/coyote_cli’s past year of commit activity

Python 0 1 3 1 Updated Sep 9, 2025
gens Public

SMD-Bioinformatics-Lund/gens’s past year of commit activity

TypeScript 16 MPL-2.0 6 27 2 Updated Sep 5, 2025
nextflow_wgs Public

SMD-Bioinformatics-Lund/nextflow_wgs’s past year of commit activity

Perl 7 6 105 (3 issues need help) 0 Updated Sep 5, 2025
trana Public Forked from genomic-medicine-sweden/TRANA
A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.

SMD-Bioinformatics-Lund/trana’s past year of commit activity

Nextflow 0 GPL-3.0 4 0 0 Updated Sep 4, 2025
PipeEval Public
Evaluate changes to your pipelines.

SMD-Bioinformatics-Lund/PipeEval’s past year of commit activity

Python 0 Apache-2.0 2 13 1 Updated Aug 29, 2025
sulphur Public
Post-processing for the the gms_16S pipeline

SMD-Bioinformatics-Lund/sulphur’s past year of commit activity

0 0 0 1 Updated Aug 28, 2025
coyote3 Public

SMD-Bioinformatics-Lund/coyote3’s past year of commit activity

CSS 0 1 24 (3 issues need help) 0 Updated Aug 26, 2025

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