Fix DenseLayout when loose bits are present in input circuit #8843
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Summary
This commit fixes the DenseLayout transpiler pass to correctly handle when an input circuit contains loose bits. Previously the pass would incorrectly assume there was always a register in the circuit and only construct the output layout with registers. This caused the pass to return an empty layout if there were no quantum registers present in the circuit, even if there were qubits in the circuit. This commit fixes this by creating the layout per qubit and then only adding the registers as metadata to the layout after the fact.
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