Ignore blank lines in mol2 #1263
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Some programs such as MDAnalysis with generate mol2 files with blank lines between the ATOM BOND and SUBSTRUCTURE sections.
Loading these with
parmed.load_fileresults inIndexError: list index out of range. See example file: l_H22.txtI think the blank lines are in spec and there has been some discussions here: MDAnalysis/mdanalysis#3747
This PR adds a small change to mol2 parser that continues on blank lines and this allows the file to be loaded. Please let me know if there is a better solution or I can do something different.
Cheers,
Alex