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  1. Cirro-SDK-Python Cirro-SDK-Python Public

    Python SDK to interact with Cirro

    Python 3

  2. nf-humann nf-humann Public

    Nextflow workflow running the HUMAnN metagenomic analysis tool

    Nextflow 2

  3. nf-arcashla nf-arcashla Public

    Nextflow workflow to perform HLA typing from RNAseq data (arcasHLA)

    Nextflow 1

  4. Cirro-local-agent Cirro-local-agent Public

    Agent to run workloads on local HPC environment

    Java 1

  5. ampliseq ampliseq Public

    Forked from nf-core/ampliseq

    Amplicon sequencing analysis workflow using DADA2 and QIIME2

    Nextflow

  6. nfcore-test-datasets nfcore-test-datasets Public

    Forked from nf-core/test-datasets

    Test data to be used for automated testing with the nf-core pipelines

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