python3Packages: hyperspy bundle #412482
Open
python3Packages: hyperspy bundle #412482
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
4759d20 to
c5e9e6e
Compare
c5e9e6e to
91c73f2
Compare
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
HyperSpy is an open source Python library which provides tools to facilitate the interactive data analysis of multidimensional datasets that can be described as multidimensional arrays of a given signal (e.g. a 2D array of spectra a.k.a spectrum image). For example, it can be used for analyzing electron microscopy data, and is the standard tool of choice for institutions such as ePSIC (Diamond Light Source) and Oxford University.
Currently the main method of setting up HyperSpy for use in workshops and academic purposes is to download the HyperSpy bundle, which includes a variety of associated packages for processing electron microscopy and crystallography data. This change tracks all of the dependencies of the HyperSpy bundle, allowing for easy use directly from nixpkgs.
Import tests are added but due to the esoteric nature of these packages, most do not have comprehensive test suites in their pyproject.toml files that we can attempt.
List of packages: [py4dstem, scikit-optimize, ncempy, pylops, particlespy, atomap, exspy, pyxem, hyperspy, emdfile, diffsims, orix, matplotlib-scalebar, diffpy-structure, abtem, pyfftw, rosettasciio, pycifrw]
Things done
nix.conf? (See Nix manual)sandbox = relaxedsandbox = truenix-shell -p nixpkgs-review --run "nixpkgs-review rev HEAD". Note: all changes have to be committed, also see nixpkgs-review usage./result/bin/)Add a 👍 reaction to pull requests you find important.