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1. ypk-xylose-pathways ypk-xylose-pathways Public

   Pereira, F., Azevedo, F., Parachin, N. S., Hahn-Hägerdal, B., Gorwa-Grauslund, M. F., & Johansson, B. (2016). Yeast Pathway Kit: A Method for Metabolic Pathway Assembly with Automatically Simulated…

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2. Cunha_et_al_2017 Cunha_et_al_2017 Public

   Costa, C. E., Romaní, A., Cunha, J. T., Johansson, B., & Domingues, L. (2017). Integrated approach for selecting efficient Saccharomyces cerevisiae for industrial lignocellulosic fermentations: Imp…

   Jupyter Notebook 1

3. dDEL dDEL Public

   Silva, P. C., Domingues, L., Collins, T., Oliveira, R., & Johansson, B. (2018). Quantitative assessment of DNA damage in the industrial ethanol production strain Saccharomyces cerevisiae PE-2. FEMS…

   Jupyter Notebook

4. Silva_et_al_2020 Silva_et_al_2020 Public

   Silva, Paulo César, Javier A. Ceja-Navarro, Flávio Azevedo, Ulas Karaoz, Eoin L. Brodie, and Björn Johansson. 2021. “A Novel D-Xylose Isomerase from the Gut of the Wood Feeding Beetle Odontotaenius…

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5. pydna-examples pydna-examples Public

   Jupyter notebooks and data files that demonstrates how pydna can be used to simulate and document cloning.

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6. pydna_template pydna_template Public template

   This is a template repository for a pydna documentation and simulation project.

   Jupyter Notebook 1