Scripts used to generate figures for the scUTRquant manuscript

Bioinformatics pipeline for single-cell 3' UTR isoform quantification

Snakemake pipeline for generating truncated transcriptome annotations with txcutr

Input definitions for the scUTRquant pipeline

scUTRquant analysis of Genome-Wide Perturb-Seq dataset

Merge and process multiple mouse 3' UTR datasets

kallisto benchmarking of multi-UTR quantification for 3'-end tag-based RNA-seq

Peak Width Analysis of the Tabula Muris Libraries

Bioinformatics pipeline for 3'-seq data of Sommerkamp et al. 2020