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Manually specify a cell identity with a specific negative marker in spatial data

Status: Open.

#121 In MarcElosua/SPOTlight;

· alohaia opened on May 14, 2025

Column <code>abs(coord_y - ymax)</code> is not found when plotSpatialScatterpie

Status: Open.

#120 In MarcElosua/SPOTlight;

· xiang-cy opened on Dec 16, 2024

Error in .filter(x[mod_genes, ], y[mod_genes, ]) : Insufficient number of features shared between single-cell and mixture dataset.

Status: Open.

#118 In MarcElosua/SPOTlight;

· Angel030331 opened on Nov 3, 2024

Subset Cells in ScatterPie

Status: Open.

#117 In MarcElosua/SPOTlight;

· ABauer26 opened on Jul 17, 2024

trainNMF error

Status: Open.

#116 In MarcElosua/SPOTlight;

· Lihyunseo opened on Apr 23, 2024

HELP! imgData is not equal to the spatialcoords

Status: Open.

#115 In MarcElosua/SPOTlight;

· GODCALLMEGOD opened on Apr 14, 2024

Scatterpie

Status: Open.

#114 In MarcElosua/SPOTlight;

· ljy-sys opened on Apr 13, 2024

Error in .extract_coord(x = x, slice = slice, img = img) : !is.null(colnames(x)) is not TRUE

Status: Open.

#113 In MarcElosua/SPOTlight;

· Noralii opened on Apr 10, 2024

assay %in% SeuratObject：：Assays（x） is not TRUE

Status: Open.

#111 In MarcElosua/SPOTlight;

· 628511miao opened on Jan 25, 2024

Regarding the PBMC (GSE133549) dataset used in the method

Status: Open.

#99 In MarcElosua/SPOTlight;

· Han117 opened on Jul 11, 2023

plotInteractions result meaning

Status: Open.

#96 In MarcElosua/SPOTlight;

· wang0430 opened on Jun 10, 2023

function plotSpatialScatterpie with image=TRUE does not work

Status: Open.

#86 In MarcElosua/SPOTlight;

· sondvo opened on Mar 2, 2023