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@MannLabs

Mann Labs

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  1. alphadia alphadia Public

    modular & open DIA search

    Jupyter Notebook 74 5

  2. alphapeptdeep alphapeptdeep Public

    Deep learning framework for proteomics

    Jupyter Notebook 131 22

  3. CKG CKG Public

    Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge disco…

    Jupyter Notebook 511 105

  4. alphapept alphapept Public

    A modular, python-based framework for mass spectrometry. Powered by nbdev.

    HTML 178 33

  5. alphatims alphatims Public

    An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

    Python 89 29

  6. alphamap alphamap Public

    An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

    Jupyter Notebook 85 21

Repositories

Showing 10 of 47 repositories
  • scPortrait Public

    scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images

    MannLabs/scPortrait’s past year of commit activity
    Python 48 Apache-2.0 4 25 2 Updated Aug 22, 2025
  • scPortrait-notebooks Public
    MannLabs/scPortrait-notebooks’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 1 Updated Aug 22, 2025
  • alphadia Public

    modular & open DIA search

    MannLabs/alphadia’s past year of commit activity
    Jupyter Notebook 74 Apache-2.0 5 16 16 Updated Aug 22, 2025
  • alphatims Public

    An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

    MannLabs/alphatims’s past year of commit activity
    Python 89 Apache-2.0 29 1 11 Updated Aug 22, 2025
  • directlfq Public

    Fast and accurate label-free quantification for small and very large numbers of proteomes

    MannLabs/directlfq’s past year of commit activity
    Jupyter Notebook 59 Apache-2.0 7 5 3 Updated Aug 22, 2025
  • alphamap Public

    An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

    MannLabs/alphamap’s past year of commit activity
    Jupyter Notebook 85 Apache-2.0 21 17 7 Updated Aug 22, 2025
  • alphapeptdeep Public

    Deep learning framework for proteomics

    MannLabs/alphapeptdeep’s past year of commit activity
    Jupyter Notebook 131 Apache-2.0 22 29 3 Updated Aug 22, 2025
  • alphabase Public

    Infrastructure of AlphaX ecosystem

    MannLabs/alphabase’s past year of commit activity
    Jupyter Notebook 41 Apache-2.0 11 6 16 Updated Aug 22, 2025
  • alphaquant Public

    An open-source Python package for accurate and sensitive peptide and protein quantification.

    MannLabs/alphaquant’s past year of commit activity
    Python 18 Apache-2.0 1 6 2 Updated Aug 21, 2025
  • alphakraken Public

    A fully automated data processing and analysis system for mass spectrometry experiments.

    MannLabs/alphakraken’s past year of commit activity
    Python 1 Apache-2.0 0 0 4 Updated Aug 21, 2025
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