Stars
Python control of micro-manager for customized data acquisition
The lean application framework for Python. Build sophisticated user interfaces with a simple Python API. Run your apps in the terminal and a web browser.
Accurate and efficient spot detection for microscopy data
Open-source laser beam profiling software designed for cheap webcams
Cloud Native Presentation Slides with Jupyter Notebook + Reveal.js
Jupyter notebooks for learning how to use SimpleITK
Python module for registering and fusing multi-view microscopy data
Utility to create a basic Python project structure with tests, CI etc.
This repository makes it easy to run your MATLAB tests on some of the most common CI platforms. The configuration files take care of setting up MATLAB and automatically executing your MATLAB tests.
Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Techn…
ZeroCostDL4Mic: A Google Colab based no-cost toolbox to explore Deep-Learning in Microscopy
Python library for control of microscope devices, supporting hardware triggers and distribution of devices over the network for performance and flexibility.
Python samples for Micro-Manager: image acquisition and microscope control system
A hub to start the next generation of Microscope Control Software
PIPython is a collection of Python modules to access a PI device and process GCS data.
Load environment variables from a .env file.
napari: a fast, interactive, multi-dimensional image viewer for python
Bridge HHMI Janelia MouseLight Database and nat R Package
A Python package to visualise neuroanatomical data in atlas space
Fast data visualization and GUI tools for scientific / engineering applications