Skip to content

GPI specs  #649

@pgaudet

Description

@pgaudet

From managers call

In https://geneontology.org/docs/gene-product-information-gpi-format-2.0/#8-parent-protein

@cmungall proposes to replace

"An ontology identifier for the biological entity " to "An ontology identifier for the gene product encoded by the biological entity"

Current list of examples:

  • default would be gene product if the information is not provided in the GPI
  • (consider adding a QC check that gene product is not allowed in GPI)
  • protein PR:000000001
  • protein-coding gene SO:0001217 
  • gene SO:0000704 
  • ncRNA SO:0000655
  • any subtype of ncRNA in the Sequence Ontology, including ncRNA-coding gene SO:0001263
  • protein-containing complex GO:0032991

Metadata

Metadata

Labels

No labels
No labels

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions