Skip to content

New downloads table for ~20 fully supported species with PAN-GO second download option #525

@suzialeksander

Description

@suzialeksander

As part of the doc drafted at https://docs.google.com/document/d/1j1zO-JHMaXi4ESrjTm_X1amLKdm3vO4szUaeB5LvxvA/edit#heading=h.25jngq5vebjo and the draft at #523, we need a new table for downloads.

comments below from @thomaspd on the draft doc:

The list of organisms is in the following table [or this can link to a separate page]:

  • [columns should be organism name, taxonomy ID, identifier space, link to download full set, link to download IBAs]
  • I suggest that links should be to GO website for ACTIVE ANNOTATION GROUPS that are the “authoritative source” and curate GO annotations directly for gene products (not complexes), protein binding annotations should (eventually, though not initially necessarily) be a separate file: human, mouse, rat, arabidopsis, zebrafish, X trop and X laevis, fly, worm, dicty, candida, E coli, pombe.
  • I suggest that other links should point to UniProt/GOA downloads. I reviewed the experimental evidence in AmiGO and I’d propose including any organism with >350 manual (EXP+IBA) annotations
  • So the table would have about 150 organisms (the 143 with IBAs, plus a few more that have >350 EXPs but no IBAs)
    Screenshot 2024-04-02 at 10 15 32

Metadata

Metadata

Labels

enhancementNew feature or request

Type

No type

Projects

No projects

Milestone

No milestone

Relationships

None yet

Development

No branches or pull requests

Issue actions